SPACEL.Scube.gpr.GPRmodel.plot_gpr_expr

GPRmodel.plot_gpr_expr(gene, training_iter, lr, data=None, pred_path=None, save=False, save_path=None, save_pred=False, save_pred_path=None, save_dpi=150, return_expr=True, *args, **kwargs)

Plotting predicted expression values.

Plotting the expression values predicted by the trained GPR model.

Parameters:

  • gene – The name of the gene for prediction.

  • training_iter – The number of model iteration for prediction.

  • lr – The learning rate of the model for prediction.

  • data – The coordinate matrix for prediction.

  • save – A boolean value indicating whether to save the prediction figure.

  • save_path – The path where the outputs will be saved. The file extension must be one of the supported picture types.

  • save_dpi – The DPI (dots per inch) of the saved results.

  • return_expr – A boolean value indicating whether to return the prediction values.

Returns:

None or the prediction values.