API

Spoint:

Spoint.model.init_model(sc_ad, st_ad, ...[, ...])	Initialize Spoint model.
Spoint.base_model.SpointModel.train([...])	Training Spoint model.
Spoint.base_model.SpointModel.deconv_spatial([...])	Deconvolute spatial transcriptomic data.

Splane:

Splane.utils.add_cell_type_composition(ad[, ...])	Add cell type composition.
Splane.model.init_model(expr_ad_list, n_clusters)	Initialize Splane model.
Splane.base_model.SplaneModel.train([...])	Training Splane model.
Splane.base_model.SplaneModel.identify_spatial_domain([...])	Identify Spaital domains.

Scube:

Scube.alignment.align(ad_list[, ...])	Pairwise alignment.
Scube.plot.plot_stacked_slices(ad_list, ...)	Plot all slices stacked
Scube.plot.plot_3d(loc[, val, color, ...])	Plot all slices stacked in 3D
Scube.gpr.GPRmodel(expr, loc, loc_resample, ...)	The GPR model class.
Scube.gpr.GPRmodel.train([lr, ...])	Training GPR model
Scube.gpr.GPRmodel.plot_gpr_expr(gene, ...)	Plotting predicted expression values.